DICOM @ OFFIS

Peer-reviewed (shortened) version of this article has been published: Fedorov A, Clunie D, Ulrich E, Bauer C, Wahle A, Brown B, Onken M, Riesmeier J, Pieper S, Kikinis R, Buatti J, Beichel RR. (2016) DICOM for quantitative imaging biomarker development: a standards based approach to sharing clinical...

I've made this thread "sticky" so it stays longer on the top of the page. I hope you do not mind

I certainly don't - thank you!

Hi, I would like to make this group aware of the recent article preprint we published jointly with some of the DCMTK developers discussing an application of using DICOM for quantitative imaging research. Fedorov A, Clunie D, Ulrich E, Bauer C, Wahle A, Brown B, Onken M, Riesmeier J, Pieper S, Kikini...

As of today, FindDCMTK.cmake in CTK has been updated with the missing include, see

https://github.com/commontk/CTK/commit/ ... 5cd7a3aad3

Also, in my previous post, there is a typo: MAKE_OSX_ARCHITECTURES should instead be CMAKE_OSX_ARCHITECTURES.

Ok, so I talked with JC today, and he pointed me to the FindDCMTK.cmake file that should be used to be able to configure an external project to use DCMTK configured with CMake: https://github.com/commontk/CTK/blob/master/Utilities/CMake/FindDCMTK.cmake The details can be learned from the comments in...

Jorg, thank you for confirming this. I didn't know if this is supposed to work or not.

I will see JC next week at the NA-MIC project week, and will ask him about the status of this issue. I will post an update to this thread if I learn something of general interest.

Hi, I realize I may be missing something very basic here. I am trying to use DCMTK from a CMake project on Mac. I compiled DCMTK configured with CMake (had to turn off ICONV, following the advice here https://github.com/commontk/CTK/issues/178). In my project, I have the following CMakeLists.txt: pr...

Hi, I would like to save segmentation masks (labels) stored as an image raster into a DICOM segmentation object using DCMTK. Let's assume I do have the original DICOM study that has been segmented/labeled. Can someone point me to where I should start? Is there an example that is most similar to what...

Thanks for the suggestion, I will give it a try. Meanwhile, I emailed our Siemens contacts, we'll see what happens and when ... On a related note, can you suggest *any* publicly available DICOM SR viewer? I have learned about DICOM SR relatively recently. From reading the papers, the idea sounds rea...

For some reason, it never occurred to me that Siemens DICOM-compliant product can have a bug!

Thank you for your reply. I will email Siemens. I wonder what is their turnaround time!

Hi, I have DCMTK version 3.6.1 compiled from source, and I am trying to read a DICOM SR produced using syngo.via. When I am trying to read this file using dsrdump, I have this error: W: GraphicData (0070,0022) VM != 2-2n in SCOORD content item W: No GraphicData for SCOORD content item W: Reading inv...